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new module DeepMAsED#11629

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SkyLexS wants to merge 4 commits into
nf-core:masterfrom
SkyLexS:deep_mased_imp_modules
Open

new module DeepMAsED#11629
SkyLexS wants to merge 4 commits into
nf-core:masterfrom
SkyLexS:deep_mased_imp_modules

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@SkyLexS SkyLexS commented May 12, 2026

PR checklist

  • DeepMAsED features extracts alignment-based statistics from a BAM file and assembly FASTA to produce per-contig feature tables, which are then consumed by DeepMAsED predict to assign each contig a misassembly score between 0 (correctly assembled) and 1 (likely misassembly) using a pre-trained neural network.
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@SkyLexS SkyLexS self-assigned this May 12, 2026
@SkyLexS SkyLexS force-pushed the deep_mased_imp_modules branch from 43aa678 to 7f6909e Compare May 13, 2026 11:02
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